When we say every deposit earns up to 1.0% APY, we mean EVERY deposit.
There are no limits - deposit as frequently as you want of any amount, and you'll receive up to 1.0% APY on all.
Just to clarify how "up to 1% APY" works:
Earned Interest = 0.5% APY x Average Daily Balance x (# days in month / # days in year). Additional 0.1% earned for every $1,000 of purchases on Wise cards up to a max of 0.5%. So total potential APY % is up to 1%. This resets every month back to the base APY % of 0.5%.